AirTrain JFK from Jamaica Station via the E, J, or Z subway lines
AirTrain JFK from Howard Beach Station via the A subway line
Long Island Rail Road from Penn Station, Grand Central Madison, or Atlantic Terminal to Jamaica Station, then AirTrain JFK
Taxi or rideshare directly from Manhattan to JFK
Private car or airport shuttle service
Express bus or local bus connections to Jamaica Station, then AirTrain JFK